​​

• Rogers-LaVanne, M.P., Bader, A., de Flamingh, A. […]  Ripan S. Malhi (2023; In Press) Association between gene methylation and experiences of historical trauma in Alaska Native Peoples. International Journal for Equity in Health.

• Perrin-Stowe, T., Coon, J.J., Lynch, L.R., de Flamingh, A., Alexander, N.B., Golebie, E., Swartz, T.M., Bader, A.C., & Halsey, S.J. (2023) “Where do I even start?” Recommendations for faculty diversifying syllabi in the Life and Environmental Sciences. Ecology and Evolution, 13(1), e9719. https://doi.org/10.1002/ece3.9719 ** top 5% of all research outputs (altmetric)

• de Flamingh, A., Rivera-Colón, A. G., Gnoske, T. P., Kerbis Peterhans, J. C., Catchen, J., Malhi, R. S., & Roca, A. L. (2023). Numt Parser: Automated identification and removal of nuclear mitochondrial pseudogenes (numts) for accurate mitochondrial genome reconstruction in Panthera. Journal of Heredity, 114(2), 120-130. https://doi.org/10.1093/jhered/esac065

• de Flamingh, A., Ishida, Y., Pečnerová, P., Vilchis, S., Siegismund, H. R., Malhi, R. S., & Roca, A. L. (2023). Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology. Frontiers in Genetics, 13. https://doi.org/10.3389/fgene.2022.1021004 ** top 5% of all research outputs (altmetric)

• Severson, A.L., Byrd, B.F., Mallott, E.K., Owings, A.C., DeGiorgio, M., de Flamingh, A., Nijmeh, C., Arellano, M., Leventhal, A., Rosenberg, N.A. & Malhi, R.S. (2022) Ancient and modern genomics of the Ohlone Indigenous population of California. PNAS: Proceedings of the National Academy of Sciences 119: e2111533119. https://doi.org/10.1073/pnas.2111533119 ** top 5% of all research outputs (altmetric)

• Bautista, C., Alfuraiji, N., Drangowska-Way, A., Ganwani, K., de Flamingh, A. & Bourne, P. (2022) Ten simple rules for improving communication among scientists. PLOS Computational Biology 18.6:e1010130

• Yarlagadda, K., Zachwieja, A., de Flamingh, A., Phungviwatnikul, T., Rivera-Colón, A., Roseman, C., Shackleford, L., Swanson, K., Malhi, R. (2022) Non-Western Canid Sampling Provides Novel Insights into Pre-Industrial Microbiomes. In Press, Proceedings of the Royal Society B: Biological Sciences

• de Flamingh, A., Coutu, A., Sealy, J., Chirikure, S., Bastos, A.D.S., Libanda-Mubusisi, N.M., Malhi, R.S., Roca, A.L. (2021) Sourcing Elephant Ivory from a Sixteenth-Century Portuguese Shipwreck. Current Biology 31: 621-628, DOI:https://doi.org/10.1016/j.cub.2020.10.086

• Buonasera, T., Eerkens, J., de Flamingh, A., Engbring, L., Yip, J., Li, H., Haas, R., DiGiuseppe, D., Grant, D., Salemi, M., Nijmeh, C., Arellano, M., Leventhal, A., Phinney, B., Byrd, B., Malhi, R.S. & Parker, G. (2020) A Comparison of Proteomic, Genomic, and Osteological Methods of Archaeological Sex Estimation. Scientific Reports 10:11897 DOI: https://doi.org/10.1038/s41598-020-68550-w

• Borthwick, R., de Flamingh, A., Hesselbarth, M., Parandhaman, A., Holland, J., Wagner, H.H., and Abdel Moniem, H.E. (2020) Alternative quantifications of landscape complementarity to model gene flow in Banded Longhorn Beetle (Typocerus velutinus velutinus). Frontiers in Genetics, 11: 307 DOI: https://doi.org/10.3389/fgene.2020.00307

• de Flamingh, A., Coutu, A., Chirikure, S., Roca, A.L. & Malhi, R.S. (2020) Accurate sex identification of ancient elephant and other animal remains using low coverage DNA shotgun sequencing data G3: Genes, Genomes, Genetics, 10: 1427–1432,  DOI: https://doi.org/10.1534/g3.119.400833

• Zhao, K., Ishida, Y., Green, C.E., Davidson, A.G., Sitam, F.A.T., Donnelly, C.L., de Flamingh, A., Perrin-Stowe, T.I.N., Bourgeois, S., Brandt, A.L., Mundis, S.J., van Aarde, R.J., Greenberg, J.A., Malhi, R.S., Georgiadis, N.J., McEwing, R. and Roca, A.L. (2019) Loxodonta Localizer: a software tool for inferring the provenance of African elephants and their ivory using mitochondrial DNA, Journal of Heredity 110 (7): 761-768 DOI: https://doi.org/10.1093/jhered/esz058

• de Flamingh, A., Roca, A.L. and van Aarde, R. (2018) Origin and phylogeography of African savannah elephants (Loxodonta africana) in Kruger and nearby parks in southern Africa. Conservation Genetics, 19:155-167 DOI: https://doi.org/10.1007/s10592-017-1005-z

• de Flamingh, A., Malhi, R.S., Roca, A.L. (2018) Species identification and mitochondrial genomes of ancient fish bones from the Riverine Kachemak tradition of the Kenai Peninsula, Alaska. Mitochondrial DNA: Part B, 3: 409-411 DOI:  https://doi.org/10.1080/23802359.2018.1456371

• de Flamingh, A., Sole, C.L. and van Aarde, R. (2015) Genetic evidence for spatial structuring in a continuous African elephant (Loxodonta africana) population, Conservation Genetics 16:613-623 DOI: https://doi.org/10.1007/s10592-014-0686-9

• de Flamingh, A., Sole, C.L. and van Aarde, R. (2014) Microsatellite repeat motif and amplicon length affect amplification success of degraded faecal DNA. Conservation Genetics Resources, 6:503-505 DOI: https://doi.org/10.1007/s12686-014-0160-5

​​

​Books & Book Chapters

​

• van Aarde, R.J., de Flamingh, A., Fourie, J., Guldemond, R., Lee, T., Mole, M., Norgaard, C., Ntumi, C., Olivier, P., D’Araujo, S.R., Roever, C., Trimble, M., & Young, K. 2013. Elephants: A way forward. Conservation Ecology Research Unit, University of Pretoria and the International Fund for Animal Welfare, Cape Town, South Africa. (https://issuu.com/ifaw/docs/a_way_forward_ceru-ifaw)